Xiaochun Li's Home Page

Xiaochun Li is a Research Scientist in the
Department of Biostatistics and Computational Biology
Dana Farber Cancer Institute
and Harvard School of Public Health.

Contact Information

Office:
LW236
Dana Farber Cancer Institute

Tel: 617-632-3602
Fax: 617-632-2444

Mailing Address:
Department of Biostatistical Science
Dana--Farber Cancer Institute
44 Binney Street
Boston, MA 02115

Templates of Book Chapter to High-Dimensional Data Analysis in Oncology

  • templates

    • Software

  • SurvCov: Estimating Covariate Distribution Conditional on Survival Time (R package)

    • Talks

  • Estimating Covariate Distribution Conditional on Survival Time (pdf, 323 KB)
  • Ranking Genes (pdf,130 KB)
  • Pre-processing SELDI-TOF-MS (pdf,185 KB)

    • About Microarrays

  • References and Links

    • Manuscripts

  • Qian Shi, Lyndsay N. Harris, Xin Lu,Xiaochun Li, Justin Hwang, Robert Gentleman, J Dirk Iglehart and Alexander Miron. Declining Plasma Fibrinogen Alpha Fragment Identifies HER2-Positive Breast Cancer Patients and Reverts to Normal Levels Post-Surgery. Journal of Proteome Research, Nov; 5(11):2947-55.
  • Xiaochun Li and Jaroslaw Harezlak. Visualization in Genomics and Proteomics. In Daniel Berrar, Martin Granzow, and Werner Dubitzky: Fundamentals of Data Mining in Genomics and Proteomics, Springer (2007). (The colored versions of figures in this Chapter can be found here).
  • Ian Krop, Annette Mdrz, Hana Carlsson, Xiaochun Li, Noga Qimron, Rebecca Gelman, Stuart Schnitt, Celina Kleer, Charlotta Enerbdck, Kornelia Polyak, A putative role for psoriasin in breast tumor progression. Cancer Research; 2005 Dec 15;65(24):11326-34.
  • Sabina Chiaretti,Xiaochun Li, Robert Gentleman, Antonella Vitale, Kathy S. Wang, Franco Mandelli, Robin Foa, Jerome Ritz. Gene Expression Profiles of B-lineage Adult Acute Lymphocytic Leukemia Reveal Distinct Genetic Patterns that Identify Lineage and Distinct Mechanisms of Transformation. Clinical Cancer Research, 2005, 11(20):7209-19.
  • Xiaochun Li, Ronghui Xu. Empirical and Kernel Estimation of Covariate Distribution Conditional on Survival Time. Computational Statistics and Data Analysis. 2005; Vol 50/12 pp 3629-3643. In Press. (A draft can be found in BEPRESS).
  • Li X., Gentleman R., Lu X., Shi Q., Iglehart J.D., Harris L. and Miron A., SELDI-TOF Mass Spectrometry Protein Data. In Gentleman, R. et al: Bioinformatics and Computational Biology Solutions Using R and Bioconductor, Springer, 2005.
  • Huber W, Li X. and Gentleman R., Visualizing Data. In Gentleman, R. et al: Bioinformatics and Computational Biology Solutions Using R and Bioconductor, Springer, 2005.
  • Jennifer R. Bellon, M.D., Lawrence N. Shulman, M.D., Steven E. Come, M.D., Xiaochun Li, Ph.D., Rebecca S. Gelman, Ph.D., Barbara J. Silver, B.A., Jay R. Harris, M.D., and Abram Recht, M.D. (2003) A Prospective Study of Concurrent CMF and Reduced-Dose Radiation Therapy in Patients with Early-Stage Breast Cancer, 2004;100(7):1358-64.
  • Sabina Chiaretti, Xiaochun Li, Robert Gentleman, Antonella Vitale, Marco Vignetti, Franco Mandelli, Jerome Ritz, Robin Foa. (2003) Gene Expression Profile of Adult T-Cell Acute Lymphocytic Leukemia Identifies Distinct Subsets of Patients with Different Respons to Therapy and Survival Blood, 1 April 2004, Vol. 103, No. 7.
    BBC Report of the paper
  • Li, Xiaochun and Heckman, NE. (2003) Local Linear Extrapolation. Nonparametric Statistics, Vol. 15, No. 4-5 / Aug.-Oct., pp565-578.
  • Xu, Ronghui and Li, Xiaochun (2003) A Comparison of Parametric versus Permutation Methods with Applications to General and Temporal Microarray Gene Expression Data. Bioinformatics, Vol. 19 no. 10, pp. 1284-1289.
  • Kneip A, Li X, MacGibbon B, Ramsay J. (2000) Curve Registration by Local Regression. Canadian Journal of Statistics, Vol. 28, No 1, pp. 19-29.
  • Ramsay J, Li X.(1998) Curve Registration. Journal of Statistical Society, Series B 6 Part 2, pp. 351-363.
  • Gu L, Li X, Chen X, Cai D. (1989) A Generator of Elementary Functions with Quadruple Precision. Proceedings of the Symposium on Scientific Software, China, University of Science and Technology Press.